JarCasting
JarCasting JarCasting

Project Group: io.github.msdk

io.github.msdk

MSDK - Data

 io.github.msdk : msdk-datamodel

Basic implementations for MSDK data model interfaces

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-spectra-centroidprofiledetection

 io.github.msdk : msdk-spectra-centroidprofiledetection

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-txt

 io.github.msdk : msdk-io-txt

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-mzdata

 io.github.msdk : msdk-io-mzdata

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-mzml

 io.github.msdk : msdk-io-mzml

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-mztab

 io.github.msdk : msdk-io-mztab

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-nativeformats

 io.github.msdk : msdk-io-nativeformats

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-filetypedetection

 io.github.msdk : msdk-io-filetypedetection

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-mzxml

 io.github.msdk : msdk-io-mzxml

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:

msdk-io-msp

 io.github.msdk : msdk-io-msp

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-netcdf

 io.github.msdk : msdk-io-netcdf

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-featuredetection-adap3d

 io.github.msdk : msdk-featuredetection-adap3d

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-chromatof

 io.github.msdk : msdk-io-chromatof

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-alignment-joinaligner

 io.github.msdk : msdk-alignment-joinaligner

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:

msdk-rawdata-baselinecorrection

 io.github.msdk : msdk-rawdata-baselinecorrection

MSDK baseline correction algorithms

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-featuredetection-gridmass

 io.github.msdk : msdk-featuredetection-gridmass

MSDK implementation of GridMass feature detection algorithm (Victor Trevino)

Last Version: 0.0.27

Release Date:

msdk-spectra-similarity

 io.github.msdk : msdk-spectra-similarity

MSDK module for calculating spectra similarity scores

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-isotopes-isotopepattern

 io.github.msdk : msdk-isotopes-isotopepattern

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-normalization-stdcompound

 io.github.msdk : msdk-normalization-stdcompound

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-featuredetection-chromatogrambuilder

 io.github.msdk : msdk-featuredetection-chromatogrambuilder

MSDK chromatogram builder module

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-db-mona

 io.github.msdk : msdk-db-mona

MassBank of America (MoNA), is an auto curating repository for storing, comparing and querying mass spectra of chemical compounds. It is metadata centric and it was designed to allow easy integration into other tools by utilize its REST based application programming interface. At the current time it contains over 200k predicted and 40k unique experimental mass spectra and their associated metadata. The predicted spectra were obtained by utilizing the lipid blast library and the experimental spectra were acquired from 30 different facilities all over the world, including several major research facilities in the United States and Japan. MoNA is utilizing the InChI Key as unique identifier for chemicals and is designed for easy scalability and expendability. This is realized by utilizing common applications like nginx, grails, AngularJS, postgresSQL and tomcat. MoNA is currently integrated in applications like MSDial, BinBase, MZMine and the statistics package R. This was accomplished by utilizing its REST based API, which is also utilized by its main AngularJS based web interface. We consider MoNA to be highly useful for crosslinking mass spectra in publications, identification of unknowns and integration in data acquisition software. This package provides you with access to the REST api of the main MoNA installation.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-id-sirius

 io.github.msdk : msdk-id-sirius

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-featuredetection-targeted

 io.github.msdk : msdk-featuredetection-targeted

MSDK targeted feature detection algorithm

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-db-kegg

 io.github.msdk : msdk-db-kegg

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-spectra-centroiding

 io.github.msdk : msdk-spectra-centroiding

Package for MSDK centroiding algorithms

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-id-metfrag

 io.github.msdk : msdk-id-metfrag

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:

msdk-spectra-splash

 io.github.msdk : msdk-spectra-splash

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-rawdata-filters

 io.github.msdk : msdk-rawdata-filters

MSDK - raw data filters

Last Version: 0.0.27

Release Date:

msdk-featuredetection-msms

 io.github.msdk : msdk-featuredetection-msms

MSDK MS/MS feature detection algorithm

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-featuredetection-srm

 io.github.msdk : msdk-featuredetection-srm

MSDK SRM feature detection algorithm

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-alignment-ransac

 io.github.msdk : msdk-alignment-ransac

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:

msdk-spectra-peakinvestigator

 io.github.msdk : msdk-spectra-peakinvestigator

Package for PeakInvestigator centroiding algorithm

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-mzdb

 io.github.msdk : msdk-io-mzdb

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-fileimport

 io.github.msdk : msdk-io-fileimport

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:

msdk-io-mgf

 io.github.msdk : msdk-io-mgf

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-id-localdatabase

 io.github.msdk : msdk-id-localdatabase

MSDK identification using local database

Last Version: 0.0.27

Release Date:

msdk-isotopes-isotopegrouper

 io.github.msdk : msdk-isotopes-isotopegrouper

MSDK grouping of features based on isotopes

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-db-gnps

 io.github.msdk : msdk-db-gnps

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:

msdk-featuredetection-openms

 io.github.msdk : msdk-featuredetection-openms

MSDK API for openMS

Last Version: 0.0.27

Release Date:
io.github.msdk

MSDK - Mass Spectrometry Development Kit

 io.github.msdk : msdk

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-all

 io.github.msdk : msdk-all

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.27

Release Date:
io.github.msdk

msdk-io-mzml-old

 io.github.msdk : msdk-io-mzml-old

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.10

Release Date:
io.github.msdk

msdk-featdet-targeteddetection

 io.github.msdk : msdk-featdet-targeteddetection

MSDK targeted feature detection algorithm

Last Version: 0.0.9

Release Date:
io.github.msdk

msdk-spectra-spectrumtypedetection

 io.github.msdk : msdk-spectra-spectrumtypedetection

A java library for the development of mass spectrometry-related algorithms.

Last Version: 0.0.9

Release Date:
io.github.msdk

msdk-features-joinaligner

 io.github.msdk : msdk-features-joinaligner

MSDK package for feature table methods

Last Version: 0.0.9

Release Date:
io.github.msdk

MSDK - IO

 io.github.msdk : msdk-io

Data import and export algorithms for MSDK

Last Version: 0.0.9

Release Date:
io.github.msdk

msdk-features-normalization-compound

 io.github.msdk : msdk-features-normalization-compound

MSDK package for feature table methods

Last Version: 0.0.9

Release Date:
io.github.msdk

msdk-featdet-gridmass

 io.github.msdk : msdk-featdet-gridmass

MSDK implementation of GridMass feature detection algorithm (Victor Trevino)

Last Version: 0.0.9

Release Date:
io.github.msdk

msdk-featdet-msmsdetection

 io.github.msdk : msdk-featdet-msmsdetection

MSDK MS/MS feature detection algorithm

Last Version: 0.0.9

Release Date:
io.github.msdk

msdk-db

 io.github.msdk : msdk-db

MSDK package for database connection modules

Last Version: 0.0.9

Release Date:

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