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de.bioforscher.singa:singa-javafx

SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

License

License
Categories

Categories

JavaFX User Interface
GroupId

GroupId

de.bioforscher.singa
ArtifactId

ArtifactId

singa-javafx
Last Version

Last Version

0.3.3
Release Date

Release Date
Type

Type

jar
Description

Description

SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

Download singa-javafx

Filename Size
singa-javafx-0.3.3.pom
singa-javafx-0.3.3.jar 157 KB
singa-javafx-0.3.3-sources.jar 134 KB
singa-javafx-0.3.3-javadoc.jar 158 KB
Browse

How to add to project

<!-- https://jarcasting.com/artifacts/de.bioforscher.singa/singa-javafx/ -->
<dependency>
    <groupId>de.bioforscher.singa</groupId>
    <artifactId>singa-javafx</artifactId>
    <version>0.3.3</version>
</dependency>
// https://jarcasting.com/artifacts/de.bioforscher.singa/singa-javafx/
implementation 'de.bioforscher.singa:singa-javafx:0.3.3'
// https://jarcasting.com/artifacts/de.bioforscher.singa/singa-javafx/
implementation ("de.bioforscher.singa:singa-javafx:0.3.3")
'de.bioforscher.singa:singa-javafx:jar:0.3.3'
<dependency org="de.bioforscher.singa" name="singa-javafx" rev="0.3.3">
  <artifact name="singa-javafx" type="jar" />
</dependency>
@Grapes(
@Grab(group='de.bioforscher.singa', module='singa-javafx', version='0.3.3')
)
libraryDependencies += "de.bioforscher.singa" % "singa-javafx" % "0.3.3"
[de.bioforscher.singa/singa-javafx "0.3.3"]

Dependencies

compile (3)

Group / Artifact Type Version
de.bioforscher.singa : singa-chemistry jar 0.3.3
de.bioforscher.singa : singa-sequence jar 0.3.3
org.slf4j : slf4j-api jar 1.7.21

runtime (1)

Group / Artifact Type Version
org.slf4j : slf4j-log4j12 jar 1.7.21

test (1)

Group / Artifact Type Version
junit : junit jar 4.12

Project Modules

There are no modules declared in this project.

Build Status License: GPL v3 MMTF support DOI

SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.

Many aspects of the API are under development. API changes are frequent, never the less we try to keep them minimal.

Quick start

SiNGA is deployed to the Maven Central Repository. Simply add the desired modules to your pom.xml:

<dependencies>
    <dependency>
        <groupId>bio.singa</groupId>
        <artifactId>singa-[module]</artifactId>
        <version>0.7.0</version>
    </dependency>
    <!-- more dependencies -->
</dependencies>

Documentation

The full JavaDocs are available at singa-bio.github.io/singa-doc.

Requirements

Make sure you have the following tools and libraries installed:

  • Java 8 or later

For p-value calculation for Fit3D:

  • R installation 3.4.x or later
  • local package installation privileges or the sfsmisc package pre-installed

Contributors

Projects using SiNGA

Versions

Version
0.3.3
0.3.2
0.3.1
0.2.3
0.2.2
0.2.1
0.2.0
0.1.3