PIA - Protein Inference Algorithms

License	License BSD license
GroupId	GroupId io.github.bigbio.external
ArtifactId	ArtifactId pia
Last Version	Last Version 1.3.23
Release Date	Release Date 02-Dec-2021
Type	Type zip
Description	Description PIA - Protein Inference Algorithms Protein inference toolbox that contains algorithms to merge results from search engines in mass spectrometry and proteomics. It provides functionalities to compute FDR at different levels including PSM, peptide and Protein levels.
Project URL	Project URL https://github.com/mpc-bioinformatics/pia
Project Organization	Project Organization Medizinisches Proteom-Center, Medical Bioinformatics
Source Code Management	Source Code Management https://github.com/bigbio/pia.git

Download pia

Filename	Size
pia-1.3.23.pom
pia-1.3.23.zip	28 MB
pia-1.3.23-sources.jar	873 KB
pia-1.3.23-javadoc.jar	1 MB
Browse

Dependencies

compile (25)

Group / Artifact	Type	Version
org.projectlombok : lombok	jar	1.18.2
info.picocli : picocli	jar	4.6.1
org.apache.commons : commons-lang3	jar	3.2.1
org.apache.commons : commons-collections4	jar	4.1
uk.ac.ebi.jmzidml » jmzidentml	jar	1.2.12-SNAPSHOT
javax.xml.bind : jaxb-api	jar	2.3.1
com.sun.xml.bind : jaxb-impl	jar	2.3.1
com.sun.xml.bind : jaxb-core	jar	2.3.0
uk.ac.ebi.pride.utilities » pride-mod	jar	2.1.9
io.github.bigbio.external : jmztab	jar	3.0.13
uk.ac.ebi.pride » px-submission-core	jar	2.0.30
com.google.code.gson : gson	jar	2.8.1
uk.ac.ebi.pride.jaxb » pride-jaxb	jar	1.0.22
it.unimi.dsi : fastutil	jar	6.5.1
psidev.psi.tools » xxindex	jar	0.23
com.compomics » mascotdatfile	jar	3.6.1
de.proteinms.xtandemparser » xtandem-parser	jar	1.13.0
org.biojava : biojava-ontology	jar	4.2.8
de.mpc » BaseLib	jar	0.0.1-SNAPSHOT
de.mpc » CvtBaseLib	jar	0.0.1-SNAPSHOT
de.mpc » PDLibrary	jar	0.0.1-SNAPSHOT
com.almworks.sqlite4java : sqlite4java	jar	1.0.392
org.xerial : sqlite-jdbc	jar	3.20.1
org.ehcache : ehcache	jar	3.1.1
com.compomics » utilities	jar	5.0.18

test (2)

Group / Artifact	Type	Version
junit : junit	jar	4.13.1
xerces : xercesImpl	jar	2.12.1

Project Modules

Versions

Version
1.3.23 02-Dec-2021
1.3.22 01-Dec-2021
1.3.21 27-Aug-2021
1.3.20 18-Aug-2021
1.3.18 15-Aug-2021