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PIA - Protein Inference Algorithms 1.3.23

Protein inference toolbox that contains algorithms to merge results from search engines in mass spectrometry and proteomics. It provides functionalities to compute FDR at different levels including PSM, peptide and Protein levels.

License

License
GroupId

GroupId

io.github.bigbio.external
ArtifactId

ArtifactId

pia
Version

Version

1.3.23
Type

Type

zip
Description

Description

PIA - Protein Inference Algorithms
Protein inference toolbox that contains algorithms to merge results from search engines in mass spectrometry and proteomics. It provides functionalities to compute FDR at different levels including PSM, peptide and Protein levels.
Project URL

Project URL

https://github.com/mpc-bioinformatics/pia
Project Organization

Project Organization

Medizinisches Proteom-Center, Medical Bioinformatics
Source Code Management

Source Code Management

https://github.com/bigbio/pia.git

Download pia 1.3.23

Filename Size
pia-1.3.23.pom
pia-1.3.23.zip 41 MB
pia-1.3.23-sources.jar 834 KB
pia-1.3.23-javadoc.jar 1 MB
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Dependencies

compile (25)

Group / Artifact Type Version
org.projectlombok : lombok jar 1.18.2
info.picocli : picocli jar 4.6.1
org.apache.commons : commons-lang3 jar 3.2.1
org.apache.commons : commons-collections4 jar 4.1
uk.ac.ebi.jmzidml » jmzidentml jar 1.2.12-SNAPSHOT
javax.xml.bind : jaxb-api jar 2.3.1
com.sun.xml.bind : jaxb-impl jar 2.3.1
com.sun.xml.bind : jaxb-core jar 2.3.0
uk.ac.ebi.pride.utilities » pride-mod jar 2.1.9
io.github.bigbio.external : jmztab jar 3.0.13
uk.ac.ebi.pride » px-submission-core jar 2.0.30
com.google.code.gson : gson jar 2.8.1
uk.ac.ebi.pride.jaxb » pride-jaxb jar 1.0.22
it.unimi.dsi : fastutil jar 6.5.1
psidev.psi.tools » xxindex jar 0.23
com.compomics » mascotdatfile jar 3.6.1
de.proteinms.xtandemparser » xtandem-parser jar 1.13.0
org.biojava : biojava-ontology jar 4.2.8
de.mpc » BaseLib jar 0.0.1-SNAPSHOT
de.mpc » CvtBaseLib jar 0.0.1-SNAPSHOT
de.mpc » PDLibrary jar 0.0.1-SNAPSHOT
com.almworks.sqlite4java : sqlite4java jar 1.0.392
org.xerial : sqlite-jdbc jar 3.20.1
org.ehcache : ehcache jar 3.1.1
com.compomics » utilities jar 5.0.18

test (2)

Group / Artifact Type Version
junit : junit jar 4.13.1
xerces : xercesImpl jar 2.12.1

Project Modules

There are no modules declared in this project.