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Pepgenome: Peptide to Genome Coordinates 1.1.1

PepGenome uses transcript translations and reference gene annotations to identify the genomic loci of peptides and post-translational modifications. Multiple occurrences of peptides in the input data resulting in the same genomic loci will be collapsed as a single occurrence in the output.

License

License
GroupId

GroupId

io.github.bigbio
ArtifactId

ArtifactId

pepgenome
Version

Version

1.1.1
Type

Type

jar
Description

Description

Pepgenome: Peptide to Genome Coordinates
PepGenome uses transcript translations and reference gene annotations to identify the genomic loci of peptides and post-translational modifications. Multiple occurrences of peptides in the input data resulting in the same genomic loci will be collapsed as a single occurrence in the output.
Project URL

Project URL

https://github.com/bigbio/pepgenome/
Project Organization

Project Organization

Big Bioinformatics Open Stack
Source Code Management

Source Code Management

https://github.com/bigbio/pepgenome.git

Download pepgenome 1.1.1

Filename Size
pepgenome-1.1.1.pom
pepgenome-1.1.1.zip 68 MB
pepgenome-1.1.1-sources.jar 74 KB
pepgenome-1.1.1-javadoc.jar 339 KB
pepgenome-1.1.1-bin.jar 77 MB
Browse 

<!-- https://jarcasting.com/artifacts/io.github.bigbio/pepgenome/ -->
<dependency>
    <groupId>io.github.bigbio</groupId>
    <artifactId>pepgenome</artifactId>
    <version>1.1.1</version>
</dependency>
// https://jarcasting.com/artifacts/io.github.bigbio/pepgenome/
implementation 'io.github.bigbio:pepgenome:1.1.1'
// https://jarcasting.com/artifacts/io.github.bigbio/pepgenome/
implementation ("io.github.bigbio:pepgenome:1.1.1")
'io.github.bigbio:pepgenome:jar:1.1.1'
<dependency org="io.github.bigbio" name="pepgenome" rev="1.1.1">
  <artifact name="pepgenome" type="jar" />
</dependency>
@Grapes(
@Grab(group='io.github.bigbio', module='pepgenome', version='1.1.1')
)
libraryDependencies += "io.github.bigbio" % "pepgenome" % "1.1.1"
[io.github.bigbio/pepgenome "1.1.1"]

Dependencies

compile (9)

Group / Artifact Type Version
uk.ac.ebi.jmzidml » jmzidentml jar 1.2.11
io.github.bigbio.pgatk » pgatk-io jar 1.0.1-SNAPSHOT
io.github.bigbio.external : pia jar 1.3.20
commons-cli : commons-cli jar 1.4
org.apache.commons : commons-lang3 jar 3.8
org.projectlombok : lombok jar 1.18.2
org.ehcache : sizeof jar 0.4.0
org.mapdb : mapdb jar 3.0.7
log4j : log4j jar 1.2.17

test (1)

Group / Artifact Type Version
junit : junit jar 4.13.1

Project Modules

There are no modules declared in this project.