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io.github.msdk:msdk-all

A java library for the development of mass spectrometry-related algorithms.

License

License
GroupId

GroupId

io.github.msdk
ArtifactId

ArtifactId

msdk-all
Last Version

Last Version

0.0.27
Release Date

Release Date
Type

Type

jar
Description

Description

A java library for the development of mass spectrometry-related algorithms.

Download msdk-all

Filename Size
msdk-all-0.0.27.pom
msdk-all-0.0.27.jar 1 KB
Browse

How to add to project

<!-- https://jarcasting.com/artifacts/io.github.msdk/msdk-all/ -->
<dependency>
    <groupId>io.github.msdk</groupId>
    <artifactId>msdk-all</artifactId>
    <version>0.0.27</version>
</dependency>
// https://jarcasting.com/artifacts/io.github.msdk/msdk-all/
implementation 'io.github.msdk:msdk-all:0.0.27'
// https://jarcasting.com/artifacts/io.github.msdk/msdk-all/
implementation ("io.github.msdk:msdk-all:0.0.27")
'io.github.msdk:msdk-all:jar:0.0.27'
<dependency org="io.github.msdk" name="msdk-all" rev="0.0.27">
  <artifact name="msdk-all" type="jar" />
</dependency>
@Grapes(
@Grab(group='io.github.msdk', module='msdk-all', version='0.0.27')
)
libraryDependencies += "io.github.msdk" % "msdk-all" % "0.0.27"
[io.github.msdk/msdk-all "0.0.27"]

Dependencies

compile (42)

Group / Artifact Type Version
io.github.msdk : msdk-datamodel jar 0.0.27
io.github.msdk : msdk-io-fileimport jar 0.0.27
io.github.msdk : msdk-io-filetypedetection jar 0.0.27
io.github.msdk : msdk-io-mzdata jar 0.0.27
io.github.msdk : msdk-io-mzdb jar 0.0.27
io.github.msdk : msdk-io-mzml jar 0.0.27
io.github.msdk : msdk-io-mztab jar 0.0.27
io.github.msdk : msdk-io-mzxml jar 0.0.27
io.github.msdk : msdk-io-nativeformats jar 0.0.27
io.github.msdk : msdk-io-netcdf jar 0.0.27
io.github.msdk : msdk-io-txt jar 0.0.27
io.github.msdk : msdk-io-chromatof jar 0.0.27
io.github.msdk : msdk-io-mgf jar 0.0.27
io.github.msdk : msdk-io-msp jar 0.0.27
io.github.msdk : msdk-rawdata-filters jar 0.0.27
io.github.msdk : msdk-rawdata-baselinecorrection jar 0.0.27
io.github.msdk : msdk-spectra-centroiding jar 0.0.27
io.github.msdk : msdk-spectra-peakinvestigator jar 0.0.27
io.github.msdk : msdk-spectra-centroidprofiledetection jar 0.0.27
io.github.msdk : msdk-spectra-splash jar 0.0.27
io.github.msdk : msdk-db-mona jar 0.0.27
io.github.msdk : msdk-db-kegg jar 0.0.27
io.github.msdk : msdk-db-gnps jar 0.0.27
io.github.msdk : msdk-id-sirius jar 0.0.27
io.github.msdk : msdk-id-metfrag jar 0.0.27
io.github.msdk : msdk-id-localdatabase jar 0.0.27
io.github.msdk : msdk-alignment-joinaligner jar 0.0.27
io.github.msdk : msdk-alignment-ransac jar 0.0.27
io.github.msdk : msdk-normalization-stdcompound jar 0.0.27
io.github.msdk : msdk-isotopes-isotopegrouper jar 0.0.27
io.github.msdk : msdk-isotopes-isotopepattern jar 0.0.27
io.github.msdk : msdk-spectra-similarity jar 0.0.27
io.github.msdk : msdk-featuredetection-chromatogrambuilder jar 0.0.27
io.github.msdk : msdk-featuredetection-targeted jar 0.0.27
io.github.msdk : msdk-featuredetection-gridmass jar 0.0.27
io.github.msdk : msdk-featuredetection-msms jar 0.0.27
io.github.msdk : msdk-featuredetection-srm jar 0.0.27
io.github.msdk : msdk-featuredetection-openms jar 0.0.27
io.github.msdk : msdk-featuredetection-adap3d jar 0.0.27
org.slf4j : slf4j-api jar 1.7.26
com.google.code.findbugs : jsr305 jar 3.0.2
com.google.guava : guava jar 27.1-jre

test (5)

Group / Artifact Type Version
junit : junit jar 4.12
org.mockito : mockito-core jar 2.27.0
org.hamcrest : hamcrest-library jar 1.3
com.github.stefanbirkner : system-rules jar 1.16.1
org.slf4j : slf4j-simple jar 1.7.26

Project Modules

There are no modules declared in this project.

About MSDK

Build Status Maven Central

Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing mass spectrometry data. The goals of the library are to provide a flexible data model with Java interfaces for mass-spectrometry related objects (including raw spectra, processed data sets, identification results etc.) and to integrate the existing algorithms that are currently scattered around various Java-based graphical tools.

Java version

MSDK requires Java runtime (JRE) version 8 or newer.

Usage

API

Please see the complete MSDK API.

Maven artifacts

MSDK jars are automatically deployed to Maven Central. In order to use MSDK, simply add the following dependency to your pom.xml:

 <dependency>
    <groupId>io.github.msdk</groupId>
    <artifactId>msdk-all</artifactId>
    <version>0.0.27</version>
 </dependency>

Development

Tutorial

Please read our brief tutorial on how to contribute new code to MSDK.

Code style

  • We use the Google Java Style Guide (https://github.com/google/styleguide)
  • You can use the eclipse-java-google-style.xml file to automatically format your code in the Eclipse IDE
  • Please write JavaDoc comments as full sentences, starting with a capital letter and ending with a period. Brevity is preferred (e.g., "Calculates standard deviation" instead of "This method calculates and returns a standard deviation of given set of numbers").

Logging

MSDK uses the SLF4J library for logging. This library can forward all logging calls to your favorite logging framework (java.util.logging, Apache log4j, or others). Please see SLF4J documentation for details.

Building

See the BUILD.md file

io.github.msdk

Mass Spectrometry Development Kit (MSDK)

MSDK is a collaborative project developing a Java library of algorithms for mass spectrometry data processing.

Versions

Version
0.0.27
0.0.26
0.0.25
0.0.24
0.0.23
0.0.22
0.0.21
0.0.20
0.0.19
0.0.18
0.0.17
0.0.16
0.0.15
0.0.14
0.0.13
0.0.12
0.0.11
0.0.10
0.0.9
0.0.8
0.0.7
0.0.6
0.0.5
0.0.4
0.0.3
0.0.2
0.0.1