GATK4

Development on GATK 4

License

License

GroupId

GroupId

org.broadinstitute
ArtifactId

ArtifactId

gatk
Last Version

Last Version

4.2.6.1
Release Date

Release Date

Type

Type

jar
Description

Description

GATK4
Development on GATK 4
Project URL

Project URL

http://github.com/broadinstitute/gatk

Download gatk

How to add to project

<!-- https://jarcasting.com/artifacts/org.broadinstitute/gatk/ -->
<dependency>
    <groupId>org.broadinstitute</groupId>
    <artifactId>gatk</artifactId>
    <version>4.2.6.1</version>
</dependency>
// https://jarcasting.com/artifacts/org.broadinstitute/gatk/
implementation 'org.broadinstitute:gatk:4.2.6.1'
// https://jarcasting.com/artifacts/org.broadinstitute/gatk/
implementation ("org.broadinstitute:gatk:4.2.6.1")
'org.broadinstitute:gatk:jar:4.2.6.1'
<dependency org="org.broadinstitute" name="gatk" rev="4.2.6.1">
  <artifact name="gatk" type="jar" />
</dependency>
@Grapes(
@Grab(group='org.broadinstitute', module='gatk', version='4.2.6.1')
)
libraryDependencies += "org.broadinstitute" % "gatk" % "4.2.6.1"
[org.broadinstitute/gatk "4.2.6.1"]

Dependencies

runtime (53)

Group / Artifact Type Version
org.broadinstitute : barclay jar 4.0.2
org.aeonbits.owner : owner jar 1.0.9
com.github.broadinstitute : picard jar 2.27.1
org.genomicsdb : genomicsdb jar 1.4.3
com.opencsv : opencsv jar 3.4
com.google.guava : guava jar 31.0.1-jre
com.github.samtools : htsjdk jar 2.24.1
com.google.cloud : google-cloud-nio jar 0.123.25
com.google.cloud : google-cloud-bigquery jar 2.9.0
com.google.cloud : google-cloud-bigquerystorage jar 2.9.1
gov.nist.math.jama : gov.nist.math.jama jar 1.1.1
com.google.cloud.bigdataoss : gcs-connector jar 1.9.4-hadoop3
org.apache.logging.log4j : log4j-api jar 2.17.1
org.apache.logging.log4j : log4j-core jar 2.17.1
org.apache.logging.log4j : log4j-jcl jar 2.17.1
org.apache.commons : commons-lang3 jar 3.5
org.apache.commons : commons-math3 jar 3.5
org.apache.commons : commons-collections4 jar 4.1
org.apache.commons : commons-vfs2 jar 2.0
org.apache.commons : commons-configuration2 jar 2.4
org.apache.httpcomponents : httpclient jar 4.5.12
commons-beanutils : commons-beanutils jar 1.9.3
commons-io : commons-io jar 2.5
org.reflections : reflections jar 0.9.10
it.unimi.dsi : fastutil jar 7.0.6
org.broadinstitute : hdf5-java-bindings jar 1.1.0-hdf5_2.11.0
org.broadinstitute : gatk-native-bindings jar 1.0.0
org.ojalgo : ojalgo jar 44.0.0
org.ojalgo : ojalgo-commons-math3 jar 1.0.0
org.apache.spark : spark-mllib_2.11 jar 2.4.5
com.thoughtworks.paranamer : paranamer jar 2.8
org.bdgenomics.bdg-formats : bdg-formats jar 0.5.0
org.bdgenomics.adam : adam-core-spark2_2.11 jar 0.28.0
org.jgrapht : jgrapht-core jar 0.9.1
org.disq-bio : disq jar 0.3.6
org.apache.hadoop : hadoop-client jar 3.2.1
com.github.jsr203hadoop : jsr203hadoop jar 1.0.3
de.javakaffee : kryo-serializers jar 0.41
org.objenesis : objenesis jar 1.2
com.github.fommil.netlib : netlib-native_ref-osx-x86_64 jar 1.1
com.github.fommil.netlib : netlib-native_ref-linux-x86_64 jar 1.1
com.github.fommil.netlib : netlib-native_system-linux-x86_64 jar 1.1
com.github.fommil.netlib : netlib-native_system-osx-x86_64 jar 1.1
com.esotericsoftware : kryo jar 3.0.3
com.esotericsoftware : reflectasm jar 1.10.0
com.intel.gkl : gkl jar 0.8.8
org.broadinstitute : gatk-bwamem-jni jar 1.0.4
org.broadinstitute : gatk-fermilite-jni jar 1.2.0
org.broadinstitute : http-nio jar 0.1.0-rc1
org.xerial : sqlite-jdbc jar 3.36.0.3
biz.k11i » xgboost-predictor jar 0.3.0
net.grey-panther : natural-comparator jar 1.1
com.fasterxml.jackson.module : jackson-module-scala_2.11 jar 2.9.8

Project Modules

There are no modules declared in this project.
org.broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

Versions

Version
4.2.6.1
4.2.6.0
4.2.5.0
4.2.4.1
4.2.4.0
4.2.3.0
4.2.2.0
4.2.1.0
4.2.0.0
4.1.9.0
4.1.8.1
4.1.8.0
4.1.7.0
4.1.6.0
4.1.5.0
4.1.4.1
4.1.4.0
4.1.3.0
4.1.2.0
4.1.1.0
4.1.0.0
4.0.12.0
4.0.11.0
4.0.10.1
4.0.10.0
4.0.9.0
4.0.8.1
4.0.8.0
4.0.7.0
4.0.6.0
4.0.5.2
4.0.5.1
4.0.5.0
4.0.4.0
4.0.3.0
4.0.2.1
4.0.2.0
4.0.1.2
4.0.1.1
4.0.1.0
4.0.0.0
4.beta.2
4.beta.1
4.alpha.2
4.alpha.1
4.alpha