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i2b2 Export Service

A service that provides REST endpoints for the i2b2 data export plugin. It supports exporting an i2b2 patient set with a user-defined configuration, as well as saving configurations.

License

License
Categories

Categories

CLI User Interface Eureka Container Microservices
GroupId

GroupId

org.eurekaclinical
ArtifactId

ArtifactId

i2b2-export-service
Last Version

Last Version

1.1-Alpha-9
Release Date

Release Date
Type

Type

war
Description

Description

i2b2 Export Service
A service that provides REST endpoints for the i2b2 data export plugin. It supports exporting an i2b2 patient set with a user-defined configuration, as well as saving configurations.
Project Organization

Project Organization

Emory University

Download i2b2-export-service

Filename Size
i2b2-export-service-1.1-Alpha-9.pom
i2b2-export-service-1.1-Alpha-9.war 22 MB
i2b2-export-service-1.1-Alpha-9-src.zip 141 KB
i2b2-export-service-1.1-Alpha-9-src.tar.gz 54 KB
i2b2-export-service-1.1-Alpha-9-sources.jar 89 KB
i2b2-export-service-1.1-Alpha-9-javadoc.jar 336 KB
i2b2-export-service-1.1-Alpha-9-bin.zip 22 MB
i2b2-export-service-1.1-Alpha-9-bin.tar.gz 22 MB
Browse

How to add to project

<!-- https://jarcasting.com/artifacts/org.eurekaclinical/i2b2-export-service/ -->
<dependency>
    <groupId>org.eurekaclinical</groupId>
    <artifactId>i2b2-export-service</artifactId>
    <version>1.1-Alpha-9</version>
    <type>war</type>
</dependency>
// https://jarcasting.com/artifacts/org.eurekaclinical/i2b2-export-service/
implementation 'org.eurekaclinical:i2b2-export-service:1.1-Alpha-9'
// https://jarcasting.com/artifacts/org.eurekaclinical/i2b2-export-service/
implementation ("org.eurekaclinical:i2b2-export-service:1.1-Alpha-9")
'org.eurekaclinical:i2b2-export-service:war:1.1-Alpha-9'
<dependency org="org.eurekaclinical" name="i2b2-export-service" rev="1.1-Alpha-9">
  <artifact name="i2b2-export-service" type="war" />
</dependency>
@Grapes(
@Grab(group='org.eurekaclinical', module='i2b2-export-service', version='1.1-Alpha-9')
)
libraryDependencies += "org.eurekaclinical" % "i2b2-export-service" % "1.1-Alpha-9"
[org.eurekaclinical/i2b2-export-service "1.1-Alpha-9"]

Dependencies

compile (5)

Group / Artifact Type Version
org.eurekaclinical : eurekaclinical-common jar 1.0-Alpha-8
org.eurekaclinical : i2b2-client jar 1.0-Alpha-3
net.sf.opencsv : opencsv jar 2.3
commons-io : commons-io jar 2.4
org.eurekaclinical : javautil jar 3.0-Alpha-7

test (2)

Group / Artifact Type Version
com.sun.jersey.jersey-test-framework : jersey-test-framework-grizzly2 jar 1.17.1
com.h2database : h2 jar 1.4.185

Project Modules

There are no modules declared in this project.

I2b2 Export

Atlanta Clinical and Translational Science Institute (ACTSI), Emory University, Atlanta, GA

What does it do?

It is an i2b2 plugin and Java web service for exporting patient data to CSV files. This project includes three modules:

  • i2b2-export-plugin: the web client plugin that the user interacts with
  • i2b2-export-service: the Java service that manages users' export configurations and communicates with i2b2 to retrieve data
  • i2b2-export-package: packages up the plugin and service into a single archive for distribution

Version 1.1 development series

Latest release: Latest release

The 1.1 development series will migrate this package to the Eureka! Clinical build system.

Version history

Version 1.0

Initial release.

Build requirements

Runtime requirements

Building it

The project uses the maven build tool. Typically, you build it by invoking mvn clean install at the command line. For simple file changes, not additions or deletions, you can usually use mvn install. See https://github.com/eurekaclinical/dev-wiki/wiki/Building-Eureka!-Clinical-projects for more details.

Installation

See the READMEs for the i2b2-export-plugin and i2b2-export-service modules for installation instructions.

Getting help

Feel free to contact us at [email protected].

org.eurekaclinical

Eureka! Clinical

Microservices for clinical and translational research

Versions

Version
1.1-Alpha-9
1.1-Alpha-8
1.1-Alpha-7
1.1-Alpha-6
1.1-Alpha-5
1.1-Alpha-4
1.1-Alpha-3
1.1-Alpha-2
1.1-Alpha-1